usage: filterCorrectionOverlaps [options]
Rewrites an ovlStore, filtering overlaps that shouldn't be used for correcting reads.
-G gkpStore input reads
-O ovlStore input overlaps
-S scoreFile output scores for each read, binary file, to 'scoreFile'
per-read logging to 'scoreFile.log' (see -nolog)
summary statistics to 'scoreFile.stats' (see -nostats)
-c coverage retain at most this many overlaps per read
-l length filter overlaps shorter than this length
-e (min-)max filter overlaps outside this range of fraction error
example: -e 0.20 filter overlaps above 20% error
example: -e 0.05-0.20 filter overlaps below 5% error
or above 20% error
-nolog don't create 'scoreFile.log'
-nostats don't create 'scoreFile.stats'
ERROR: no gatekeeper store (-G) supplied.
ERROR: no overlap store (-O) supplied.
ERROR: no output scoreFile (-S) supplied.