ovStoreSorter¶

usage: ovStoreSorter ...
-O x.ovlStore    path to overlap store to build the final index for
-G asm.gkpStore  path to gkpStore for this assembly

-F s             number of slices used in bucketizing/sorting
-job j m         index of this overlap input file, and max number of files

-M m             maximum memory to use, in gigabytes

-deleteearly     remove intermediates as soon as possible (unsafe)
-deletelate      remove intermediates when outputs exist (safe)

-force           force a recompute, even if the output exists

DANGER    DO NOT USE     DO NOT USE     DO NOT USE    DANGER
DANGER                                                DANGER
DANGER   This command is difficult to run by hand.    DANGER