Canu PipelineΒΆ

The pipeline is described in Koren S, Walenz BP, Berlin K, Miller JR, Phillippy AM. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. bioRxiv. (2016). Figure 1 of the paper shows the primary pipeline (below, top) and the supplement contains the sub-pipeline for building read and overlap databases (below, bottom).