ovStoreBucketizerΒΆ
usage: ovStoreBucketizer -O asm.ovlStore -G asm.gkpStore -i file.ovb.gz -job j [opts]
-O asm.ovlStore path to store to create
-G asm.gkpStore path to gkpStore for this assembly
-C config path to previously created ovStoreBuild config data file
-i file.ovb.gz input overlaps
-job j index of this overlap input file
-F f use up to 'f' files for store creation
-obt filter overlaps for OBT
-dup filter overlaps for OBT/dedupe
-e e filter overlaps above e fraction error
-raw write uncompressed buckets
DANGER DO NOT USE DO NOT USE DO NOT USE DANGER
DANGER DANGER
DANGER This command is difficult to run by hand. DANGER
DANGER Use ovStoreCreate instead. DANGER
DANGER DANGER
DANGER DO NOT USE DO NOT USE DO NOT USE DANGER
ERROR: No overlap store (-O) supplied.
ERROR: No gatekeeper store (-G) supplied.
ERROR: No input (-i) supplied.
ERROR: No job index (-job) supplied.